The priest was attacked by more than 50 young people who were riding bikes during a Friday service.
A group of Hindu believers attacked the Christians over a land dispute in southern India.
A Hindu nationalist group in India told the school to remove Christian symbols or face the dire consequences.
Fr Dominic Pinto was arrested on charges of trying to convert poor Hindus.
Kerala’s Catholic Congress organized the petition to raise awareness of the problems with living conditions.
Seventeen Christians, including pastors, have been jailed this year already.
The ministry did not give any reason why they cancelled the registration of World Vision India.
The priest working among slum children is accused of violating child rights.
Police in Uttar Pradesh arrested two Christians for praying at home